Variant report

Variant	rs55880712
Chromosome Location	chr10:4346449-4346450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11252407	1.00[EUR][1000 genomes]
rs11252427	1.00[EUR][1000 genomes]
rs11252428	1.00[EUR][1000 genomes]
rs11815588	1.00[EUR][1000 genomes]
rs11819395	1.00[EUR][1000 genomes]
rs12246351	1.00[EUR][1000 genomes]
rs12250485	1.00[EUR][1000 genomes]
rs12266164	1.00[EUR][1000 genomes]
rs1616203	1.00[EUR][1000 genomes]
rs1679445	1.00[EUR][1000 genomes]
rs1679453	1.00[EUR][1000 genomes]
rs1923398	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4142671	1.00[EUR][1000 genomes]
rs60543757	1.00[EUR][1000 genomes]
rs7087506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097687	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73590778	1.00[EUR][1000 genomes]
rs73590779	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73590787	1.00[EUR][1000 genomes]
rs73590789	1.00[EUR][1000 genomes]
rs73592723	1.00[EUR][1000 genomes]
rs74114737	1.00[EUR][1000 genomes]
rs7903376	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913017	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919733	1.00[EUR][1000 genomes]
rs7920841	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7924147	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv522540	chr10:4343047-4348396	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4334800-4349200	Weak transcription	Right Atrium	heart
2	chr10:4337800-4349200	Weak transcription	Fetal Heart	heart
3	chr10:4342800-4350600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:4344000-4348800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:4344400-4349200	Weak transcription	Fetal Brain Male	brain
6	chr10:4345400-4348200	Weak transcription	Fetal Lung	lung
7	chr10:4345400-4351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:4345400-4352400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:4345600-4346800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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