Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11265507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11265508	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11265509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11265512	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11265515	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12059800	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12060340	1.00[JPT][hapmap]
rs12064282	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12091185	1.00[EUR][1000 genomes]
rs12094513	1.00[EUR][1000 genomes]
rs12094649	1.00[EUR][1000 genomes]
rs12094703	1.00[EUR][1000 genomes]
rs12095453	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13376023	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16832505	0.90[AMR][1000 genomes]
rs16832515	0.90[AMR][1000 genomes]
rs2297560	1.00[EUR][1000 genomes]
rs28541440	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28794254	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35779394	1.00[EUR][1000 genomes]
rs58170012	1.00[EUR][1000 genomes]
rs58615002	1.00[EUR][1000 genomes]
rs60429964	1.00[EUR][1000 genomes]
rs60721814	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160873600-160877200	Enhancers	Ovary	ovary
2	chr1:160875400-160880600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:160875600-160880600	Weak transcription	Pancreas	Pancrea
4	chr1:160875800-160878400	Weak transcription	Right Atrium	heart
5	chr1:160875800-160879200	Enhancers	Fetal Heart	heart
6	chr1:160875800-160879800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:160875800-160880600	Weak transcription	Right Ventricle	heart
8	chr1:160876000-160877800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:160876000-160878400	Weak transcription	Gastric	stomach
10	chr1:160876000-160878400	Weak transcription	Left Ventricle	heart
11	chr1:160876600-160881200	Weak transcription	Stomach Mucosa	stomach

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