Variant report

Variant	rs28794254
Chromosome Location	chr1:160873011-160873012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11265507	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265508	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265509	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265512	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265518	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12058717	1.00[EUR][1000 genomes]
rs12059800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12064282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12089284	1.00[EUR][1000 genomes]
rs13376023	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16832505	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16832515	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2271966	1.00[EUR][1000 genomes]
rs28541440	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7553511	1.00[EUR][1000 genomes]
rs7553826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160870200-160875600	Weak transcription	Spleen	Spleen
2	chr1:160871600-160874200	Weak transcription	Right Atrium	heart
3	chr1:160872000-160873600	Weak transcription	Ovary	ovary
4	chr1:160872800-160875200	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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