Variant report

Variant	rs12059800
Chromosome Location	chr1:160873991-160873992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160869759..160871916-chr1:160873094..160874895,2	K562	blood:
2	chr1:160872347..160875327-chr1:160877154..160879416,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11265507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11265508	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11265509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11265512	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11265518	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12058717	1.00[EUR][1000 genomes]
rs12059277	1.00[MEX][hapmap]
rs12060340	1.00[JPT][hapmap]
rs12064282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065420	1.00[MEX][hapmap]
rs12074019	1.00[MEX][hapmap]
rs12084061	1.00[YRI][hapmap]
rs12089284	1.00[EUR][1000 genomes]
rs12090411	1.00[MEX][hapmap]
rs12094026	1.00[MEX][hapmap]
rs12095453	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs12095682	1.00[MEX][hapmap]
rs13376023	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16832484	1.00[MEX][hapmap]
rs16832505	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16832515	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2271966	1.00[EUR][1000 genomes]
rs28541440	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28794254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7553511	1.00[EUR][1000 genomes]
rs7553826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160870200-160875600	Weak transcription	Spleen	Spleen
2	chr1:160871600-160874200	Weak transcription	Right Atrium	heart
3	chr1:160872800-160875200	Weak transcription	Gastric	stomach
4	chr1:160873600-160877200	Enhancers	Ovary	ovary
5	chr1:160873800-160875000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links