Variant report

Variant	rs7553826
Chromosome Location	chr1:160816982-160816983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11265507	1.00[EUR][1000 genomes]
rs11265508	1.00[EUR][1000 genomes]
rs11265509	1.00[EUR][1000 genomes]
rs11265512	1.00[EUR][1000 genomes]
rs11265515	1.00[EUR][1000 genomes]
rs12058717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059800	1.00[EUR][1000 genomes]
rs12064282	1.00[EUR][1000 genomes]
rs12089284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376023	1.00[EUR][1000 genomes]
rs16832505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271966	1.00[EUR][1000 genomes]
rs28794254	1.00[EUR][1000 genomes]
rs7536747	0.98[AFR][1000 genomes]
rs7553511	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv946456	chr1:160812650-160824679	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160811400-160820200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:160811800-160824600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:160812800-160824200	Weak transcription	Thymus	Thymus
4	chr1:160814800-160820200	Weak transcription	Fetal Intestine Large	intestine
5	chr1:160815000-160817800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:160815400-160817000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:160815400-160817800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr1:160815400-160820600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:160816400-160817800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:160816400-160819200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:160816600-160817800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:160816800-160817600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:160816800-160820200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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