Variant report

Variant	rs16832505
Chromosome Location	chr1:160838063-160838064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11265507	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265512	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265515	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265518	0.90[AMR][1000 genomes]
rs12058717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059800	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064282	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376023	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16832484	0.87[YRI][hapmap]
rs16832486	0.80[YRI][hapmap]
rs16832515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271966	1.00[EUR][1000 genomes]
rs28541440	0.90[AMR][1000 genomes]
rs28794254	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7553511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160832600-160847400	Weak transcription	Spleen	Spleen
2	chr1:160833600-160840000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:160834600-160838400	Enhancers	Fetal Intestine Small	intestine
4	chr1:160834600-160849000	Weak transcription	Ovary	ovary
5	chr1:160835000-160838400	Enhancers	Fetal Intestine Large	intestine
6	chr1:160835400-160846400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:160836200-160844600	Weak transcription	A549	lung
8	chr1:160836400-160844600	Weak transcription	Pancreas	Pancrea
9	chr1:160836800-160839600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:160836800-160840000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:160837400-160840400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:160837600-160839000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:160837600-160839400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:160837800-160838400	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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