Variant report

Variant	rs1145696
Chromosome Location	chr11:75326736-75326737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75287961..75290671-chr11:75324670..75327519,2	MCF-7	breast:
2	chr11:75320436..75322582-chr11:75325180..75328802,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1234668	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508193	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs541993	0.91[CEU][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes]
rs544698	0.93[EUR][1000 genomes]
rs546156	0.91[CEU][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs604694	0.81[CEU][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs641976	0.93[EUR][1000 genomes]
rs652452	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs654949	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs656007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs657639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs660343	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs663515	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs668378	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs687793	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128846	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
3	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:75310200-75329800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:75314000-75328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:75319600-75329600	Weak transcription	Fetal Stomach	stomach
8	chr11:75322200-75327600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:75323400-75337200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:75324200-75328400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:75324400-75328200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:75324400-75328200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:75325400-75327600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:75325400-75329800	Weak transcription	Lung	lung
15	chr11:75326000-75326800	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:75326000-75326800	Enhancers	Brain Germinal Matrix	brain
17	chr11:75326000-75326800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr11:75326000-75327800	Enhancers	Fetal Lung	lung
19	chr11:75326000-75328400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr11:75326200-75326800	Enhancers	Brain Anterior Caudate	brain
21	chr11:75326200-75326800	Enhancers	Brain Substantia Nigra	brain
22	chr11:75326200-75327000	Enhancers	Brain Hippocampus Middle	brain
23	chr11:75326200-75328200	Enhancers	Fetal Brain Female	brain
24	chr11:75326200-75328400	Enhancers	Fetal Brain Male	brain
25	chr11:75326400-75326800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr11:75326400-75326800	Enhancers	Fetal Heart	heart
27	chr11:75326400-75327000	Enhancers	Brain Angular Gyrus	brain
28	chr11:75326400-75327800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:75326600-75326800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:75326600-75326800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:75326600-75326800	Enhancers	Fetal Intestine Large	intestine
32	chr11:75326600-75326800	Enhancers	Fetal Muscle Leg	muscle
33	chr11:75326600-75326800	Enhancers	Sigmoid Colon	Sigmoid Colon

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