Variant report

Variant	rs544698
Chromosome Location	chr11:75305865-75305866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75274194..75275717-chr11:75305204..75308053,2	K562	blood:
2	chr11:75301994..75305996-chr11:75306128..75308913,4	MCF-7	breast:
3	chr11:75303810..75306638-chr11:75313852..75316089,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149257	Chromatin interaction
ENSG00000255434	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1145696	0.93[EUR][1000 genomes]
rs1234668	0.93[EUR][1000 genomes]
rs2508193	0.91[EUR][1000 genomes]
rs541993	0.99[EUR][1000 genomes]
rs546156	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs604694	0.91[EUR][1000 genomes]
rs641976	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs652452	0.99[EUR][1000 genomes]
rs654949	0.91[EUR][1000 genomes]
rs656007	0.91[EUR][1000 genomes]
rs657639	0.91[EUR][1000 genomes]
rs660343	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs663515	0.93[EUR][1000 genomes]
rs668378	0.91[EUR][1000 genomes]
rs687793	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7128846	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75295600-75310800	Weak transcription	Right Atrium	heart
3	chr11:75295600-75314200	Weak transcription	Lung	lung
4	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:75296600-75321000	Weak transcription	Ovary	ovary
6	chr11:75301600-75313800	Weak transcription	Fetal Lung	lung
7	chr11:75302200-75306800	Enhancers	Fetal Muscle Leg	muscle
8	chr11:75302800-75312600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:75303600-75306000	Enhancers	Brain Hippocampus Middle	brain
10	chr11:75303800-75306600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:75303800-75306800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:75303800-75307000	Enhancers	Brain Anterior Caudate	brain
13	chr11:75304000-75306000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:75304000-75306000	Enhancers	Brain Substantia Nigra	brain
15	chr11:75304000-75306200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:75304000-75306200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:75304000-75306400	Enhancers	Fetal Stomach	stomach
18	chr11:75304200-75306200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:75304400-75306600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:75304400-75306800	Enhancers	Brain Germinal Matrix	brain
21	chr11:75304600-75306400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:75304800-75306000	Weak transcription	Fetal Heart	heart
23	chr11:75304800-75306000	Enhancers	Rectal Smooth Muscle	rectum
24	chr11:75304800-75309200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:75305000-75307600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:75305000-75308800	Enhancers	K562	blood
27	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
28	chr11:75305200-75306600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:75305200-75306600	Weak transcription	HSMMtube	muscle
30	chr11:75305200-75309400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:75305400-75307800	Weak transcription	Fetal Intestine Small	intestine
32	chr11:75305400-75309000	Weak transcription	Fetal Intestine Large	intestine
33	chr11:75305600-75307000	Weak transcription	Fetal Brain Female	brain
34	chr11:75305600-75308800	Weak transcription	Fetal Brain Male	brain
35	chr11:75305600-75316000	Weak transcription	Brain Angular Gyrus	brain
36	chr11:75305800-75306400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:75305800-75306400	Enhancers	Spleen	Spleen
38	chr11:75305800-75307200	Enhancers	Fetal Thymus	thymus
39	chr11:75305800-75313400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:75305800-75316000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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