Variant report

Variant	rs657639
Chromosome Location	chr11:75372466-75372467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1145696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1234668	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2508193	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512500	0.81[AMR][1000 genomes]
rs541993	0.90[CEU][hapmap];0.83[YRI][hapmap];0.90[EUR][1000 genomes]
rs544698	0.91[EUR][1000 genomes]
rs546156	0.90[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs604694	0.92[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs641976	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs652452	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs654949	1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs656007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs660343	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs663515	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668378	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs687793	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128846	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75364600-75378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:75367200-75374200	Weak transcription	Fetal Brain Male	brain
3	chr11:75367200-75376400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:75367400-75377800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:75367600-75374400	Weak transcription	Fetal Brain Female	brain
6	chr11:75367600-75376400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:75367600-75376600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:75367600-75378200	Weak transcription	Aorta	Aorta
9	chr11:75367800-75373200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:75367800-75374200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:75367800-75374200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:75367800-75374600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:75367800-75377800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:75368000-75373400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:75369000-75374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:75371800-75373400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:75371800-75373800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:75372000-75373000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:75372000-75373400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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