Variant report

Variant	rs641976
Chromosome Location	chr11:75383676-75383677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1145696	0.93[EUR][1000 genomes]
rs1234668	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2508193	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs541993	0.90[EUR][1000 genomes]
rs544698	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs546156	0.93[EUR][1000 genomes]
rs604694	0.87[EUR][1000 genomes]
rs652452	0.90[EUR][1000 genomes]
rs654949	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs656007	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs657639	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660343	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs663515	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs668378	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs687793	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7128846	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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