Variant report

Variant	rs1234668
Chromosome Location	chr11:75357531-75357532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1145696	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs512500	0.81[AMR][1000 genomes]
rs541993	0.92[EUR][1000 genomes]
rs544698	0.93[EUR][1000 genomes]
rs546156	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs604694	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs641976	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs652452	0.92[EUR][1000 genomes]
rs654949	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs656007	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs657639	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs660343	0.93[EUR][1000 genomes]
rs663515	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs668378	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs687793	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128846	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75351600-75362000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:75351600-75362000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:75351600-75366600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:75353800-75366400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:75355000-75362600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:75355000-75366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:75355200-75366400	Weak transcription	Fetal Brain Male	brain
8	chr11:75355400-75361200	Weak transcription	Fetal Brain Female	brain
9	chr11:75355400-75362400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:75356200-75362000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:75356400-75357600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:75357000-75365200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links