Variant report

Variant	rs11486647
Chromosome Location	chr6:69338953-69338954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60256757	1.00[AMR][1000 genomes]
rs6933218	1.00[AMR][1000 genomes]
rs7341220	1.00[AMR][1000 genomes]
rs7740604	1.00[AMR][1000 genomes]
rs9454593	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454597	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454600	1.00[AMR][1000 genomes]
rs9454601	1.00[AMR][1000 genomes]
rs9454603	1.00[AMR][1000 genomes]
rs9454607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69336600-69342600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69338200-69342200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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