Variant report

Variant	rs6933218
Chromosome Location	chr6:69360690-69360691
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69358462..69361443-chr6:69362578..69364928,4	K562	blood:
2	chr6:69355292..69359376-chr6:69359699..69365505,6	K562	blood:
3	chr6:69346849..69353858-chr6:69356877..69365508,11	K562	blood:
4	chr6:69360582..69362510-chr6:71104396..71107206,2	K562	blood:
5	chr6:69359484..69364655-chr6:69364836..69370262,9	K562	blood:
6	chr6:69359830..69361786-chr6:69366952..69369781,2	K562	blood:
7	chr6:69349831..69353456-chr6:69358636..69362534,5	K562	blood:

Variant related genes	Relation type
ENSG00000237643	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11486647	1.00[AMR][1000 genomes]
rs60256757	1.00[AMR][1000 genomes]
rs7341220	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740604	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs9454593	1.00[AMR][1000 genomes]
rs9454594	1.00[AMR][1000 genomes]
rs9454597	1.00[AMR][1000 genomes]
rs9454598	1.00[AMR][1000 genomes]
rs9454600	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454601	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454603	0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454607	0.91[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
2	chr6:69352200-69363200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69352400-69361000	Weak transcription	Fetal Brain Female	brain
5	chr6:69359000-69361000	Enhancers	Brain Hippocampus Middle	brain
6	chr6:69359600-69361600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:69359600-69365400	Enhancers	Fetal Lung	lung
8	chr6:69359600-69365800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:69359800-69362000	Weak transcription	Pancreas	Pancrea
10	chr6:69359800-69364200	Enhancers	Fetal Stomach	stomach
11	chr6:69360000-69361000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:69360000-69361000	Weak transcription	K562	blood
13	chr6:69360000-69362000	Weak transcription	Fetal Brain Male	brain
14	chr6:69360200-69361000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:69360200-69361400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:69360200-69361600	Enhancers	Brain Anterior Caudate	brain
17	chr6:69360200-69362400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:69360400-69361400	Active TSS	Brain Substantia Nigra	brain
19	chr6:69360400-69363800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:69360600-69361200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:69360600-69362000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:69360600-69362000	Enhancers	Brain Angular Gyrus	brain
23	chr6:69360600-69362000	Enhancers	NH-A	brain
24	chr6:69360600-69362400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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