Variant report

Variant	rs7740604
Chromosome Location	chr6:69382287-69382288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11486647	1.00[AMR][1000 genomes]
rs60256757	1.00[AMR][1000 genomes]
rs6933218	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs7341220	0.96[YRI][hapmap];1.00[AMR][1000 genomes]
rs9454593	1.00[AMR][1000 genomes]
rs9454594	1.00[AMR][1000 genomes]
rs9454597	1.00[AMR][1000 genomes]
rs9454598	1.00[AMR][1000 genomes]
rs9454600	1.00[AMR][1000 genomes]
rs9454601	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs9454603	1.00[AMR][1000 genomes]
rs9454607	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69374800-69382800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69375000-69382800	Weak transcription	Fetal Lung	lung
5	chr6:69379200-69396200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:69379200-69398800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:69379400-69382800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:69379400-69382800	Weak transcription	Brain Substantia Nigra	brain
9	chr6:69380600-69383200	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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