Variant report

Variant	rs9454603
Chromosome Location	chr6:69367888-69367889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11486647	1.00[AMR][1000 genomes]
rs60256757	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933218	0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7341220	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740604	1.00[AMR][1000 genomes]
rs9454593	1.00[AMR][1000 genomes]
rs9454594	1.00[AMR][1000 genomes]
rs9454597	1.00[AMR][1000 genomes]
rs9454598	1.00[AMR][1000 genomes]
rs9454600	1.00[AMR][1000 genomes]
rs9454601	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69363000-69369600	Weak transcription	Fetal Brain Male	brain
3	chr6:69363800-69368400	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69365800-69377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:69366600-69368400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:69366800-69368400	Enhancers	Brain Anterior Caudate	brain
8	chr6:69367200-69368400	Flanking Active TSS	K562	blood
9	chr6:69367400-69371800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:69367600-69370400	Weak transcription	Brain Substantia Nigra	brain
11	chr6:69367600-69377600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:69367800-69371600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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