Variant report

Variant	rs9454600
Chromosome Location	chr6:69353367-69353368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11486647	1.00[AMR][1000 genomes]
rs60256757	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933218	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7341220	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740604	1.00[AMR][1000 genomes]
rs9454593	1.00[AMR][1000 genomes]
rs9454594	1.00[AMR][1000 genomes]
rs9454597	1.00[AMR][1000 genomes]
rs9454598	1.00[AMR][1000 genomes]
rs9454601	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454603	1.00[AMR][1000 genomes]
rs9454607	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69350600-69355000	Weak transcription	Right Ventricle	heart
2	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
3	chr6:69351000-69353800	Enhancers	Brain Substantia Nigra	brain
4	chr6:69351600-69353600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:69352200-69363200	Weak transcription	Brain Germinal Matrix	brain
6	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69352400-69353400	Active TSS	Brain Angular Gyrus	brain
8	chr6:69352400-69361000	Weak transcription	Fetal Brain Female	brain
9	chr6:69352800-69353600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:69352800-69353600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:69352800-69353600	Enhancers	Fetal Lung	lung
12	chr6:69353000-69353400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:69353000-69353400	Enhancers	Brain Cingulate Gyrus	brain
14	chr6:69353000-69353600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr6:69353000-69353600	Enhancers	K562	blood
16	chr6:69353200-69353400	Enhancers	Brain Anterior Caudate	brain
17	chr6:69353200-69353400	Enhancers	Brain Hippocampus Middle	brain
18	chr6:69353200-69353400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:69353200-69359600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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