Variant report

Variant	rs11564403
Chromosome Location	chr18:25662803-25662804
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11083244	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083247	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564295	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11564298	0.89[YRI][hapmap]
rs11564398	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564401	0.95[CEU][hapmap]
rs11564410	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564414	0.86[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11564418	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11664205	0.87[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11664343	0.86[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs1220027	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12454980	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956425	0.82[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12957702	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12957780	0.87[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12971156	1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1550662	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468213	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468261	0.87[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17468415	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468443	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468699	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:25651600-25665200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:25652600-25663800	Weak transcription	Right Ventricle	heart
5	chr18:25654000-25666000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:25656200-25663000	Weak transcription	Brain Angular Gyrus	brain
8	chr18:25656200-25663000	Weak transcription	Brain Anterior Caudate	brain
9	chr18:25657200-25663800	Weak transcription	Brain Hippocampus Middle	brain
10	chr18:25657200-25666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr18:25657400-25663200	Weak transcription	Brain Substantia Nigra	brain
12	chr18:25657800-25666000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr18:25658600-25666800	Weak transcription	Fetal Kidney	kidney
14	chr18:25658800-25666600	Weak transcription	HSMMtube	muscle
15	chr18:25659000-25664600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr18:25659000-25665600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr18:25660200-25664600	Weak transcription	Right Atrium	heart
18	chr18:25660200-25664800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:25660200-25666200	Weak transcription	Osteobl	bone
20	chr18:25660200-25666600	Weak transcription	HSMM	muscle
21	chr18:25660200-25666800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr18:25660200-25666800	Weak transcription	Fetal Brain Male	brain
23	chr18:25661000-25663600	Weak transcription	Brain Germinal Matrix	brain
24	chr18:25661000-25663800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr18:25661000-25665200	Weak transcription	NH-A	brain
26	chr18:25661000-25666200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr18:25661200-25664600	Weak transcription	Left Ventricle	heart
28	chr18:25661200-25666800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr18:25661400-25663800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr18:25661400-25664000	Weak transcription	Fetal Heart	heart
31	chr18:25661400-25664200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr18:25661400-25665400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr18:25661400-25666400	Weak transcription	HepG2	liver
34	chr18:25661800-25663000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr18:25662000-25663400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr18:25662000-25667000	Weak transcription	NHLF	lung
37	chr18:25662600-25663000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr18:25662600-25667000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr18:25662800-25663000	Enhancers	Liver	Liver
40	chr18:25662800-25663200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr18:25662800-25663400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr18:25662800-25665000	Enhancers	A549	lung
43	chr18:25662800-25666400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr18:25662800-25666600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr18:25662800-25667400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr18:25662800-25668000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr18:25662800-25670000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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