Variant report

Variant	rs17468213
Chromosome Location	chr18:25594931-25594932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11083244	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11083247	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11564295	0.82[CEU][hapmap]
rs11564398	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11564403	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11564410	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11564414	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11564418	0.82[CEU][hapmap]
rs11664205	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11664343	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs1220027	0.87[EUR][1000 genomes]
rs12454980	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12956425	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12957702	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12957780	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12971156	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1550662	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468261	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468415	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468443	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468699	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1066192	chr18:25454413-25606736	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv543669	chr18:25454413-25606736	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25556200-25595800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25580600-25595800	Weak transcription	Left Ventricle	heart
3	chr18:25583600-25599000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
5	chr18:25584400-25595000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr18:25589800-25611000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:25590000-25596000	Weak transcription	Fetal Brain Female	brain
8	chr18:25591600-25595800	Weak transcription	HepG2	liver
9	chr18:25592000-25595200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr18:25592000-25599000	Weak transcription	Liver	Liver
11	chr18:25592400-25611000	Weak transcription	Brain Germinal Matrix	brain
12	chr18:25593400-25596200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr18:25593600-25595200	Enhancers	Fetal Kidney	kidney
14	chr18:25593600-25595800	Enhancers	Osteobl	bone
15	chr18:25593600-25612000	Weak transcription	HUVEC	blood vessel
16	chr18:25593800-25595200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr18:25593800-25595200	Enhancers	NH-A	brain
18	chr18:25593800-25595800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr18:25593800-25612600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr18:25594200-25595000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr18:25594200-25596800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:25594400-25595000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr18:25594400-25595800	Weak transcription	Right Atrium	heart
24	chr18:25594400-25597800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr18:25594400-25599400	Weak transcription	A549	lung
26	chr18:25594600-25599000	Weak transcription	HSMM	muscle
27	chr18:25594800-25595200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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