Variant report

Variant	rs17468699
Chromosome Location	chr18:25656558-25656559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11083244	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083247	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564295	0.86[CEU][hapmap];0.89[YRI][hapmap]
rs11564398	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564401	0.95[CEU][hapmap]
rs11564403	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564410	1.00[CEU][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564414	0.86[CEU][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11564418	0.86[CEU][hapmap];0.88[YRI][hapmap]
rs11664205	0.87[CEU][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11664343	0.86[CEU][hapmap];0.89[YRI][hapmap];0.80[EUR][1000 genomes]
rs1220027	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12454980	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956425	0.82[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12957702	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12957780	0.87[CEU][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12971156	0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1550662	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468213	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468261	0.87[CEU][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17468415	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468443	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
2	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:25649600-25661400	Enhancers	Fetal Heart	heart
4	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:25651200-25661800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr18:25651600-25665200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:25652400-25657000	Weak transcription	HUVEC	blood vessel
8	chr18:25652400-25659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr18:25652400-25659600	Weak transcription	Right Atrium	heart
10	chr18:25652600-25659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:25652600-25661800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr18:25652600-25663800	Weak transcription	Right Ventricle	heart
13	chr18:25653200-25657200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr18:25654000-25656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr18:25654000-25666000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr18:25654400-25656800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr18:25654400-25660000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr18:25654600-25657800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr18:25655000-25657200	Enhancers	Brain Hippocampus Middle	brain
20	chr18:25655200-25657400	Enhancers	Brain Cingulate Gyrus	brain
21	chr18:25655200-25657400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr18:25655200-25657400	Enhancers	Brain Substantia Nigra	brain
23	chr18:25655400-25657600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:25655600-25656800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr18:25655600-25657400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr18:25655600-25659600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr18:25655600-25660800	Weak transcription	Left Ventricle	heart
28	chr18:25655800-25657000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr18:25655800-25657000	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr18:25655800-25657000	Enhancers	A549	lung
31	chr18:25655800-25657400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr18:25655800-25659800	Weak transcription	Brain Germinal Matrix	brain
33	chr18:25655800-25660800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr18:25656000-25657000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr18:25656000-25658200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr18:25656000-25659600	Weak transcription	HSMM	muscle
38	chr18:25656200-25656600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr18:25656200-25656600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr18:25656200-25656800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr18:25656200-25656800	Weak transcription	NH-A	brain
42	chr18:25656200-25658000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr18:25656200-25658200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr18:25656200-25658200	Weak transcription	HSMMtube	muscle
45	chr18:25656200-25658400	Weak transcription	HepG2	liver
46	chr18:25656200-25663000	Weak transcription	Brain Angular Gyrus	brain
47	chr18:25656200-25663000	Weak transcription	Brain Anterior Caudate	brain
48	chr18:25656400-25658200	Weak transcription	Osteobl	bone
49	chr18:25656400-25662600	Weak transcription	Muscle Satellite Cultured Cells	--

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