Variant report

Variant	rs12956425
Chromosome Location	chr18:25610448-25610449
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11083244	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11083247	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11564295	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11564298	0.86[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11564398	0.82[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11564403	0.82[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11564410	0.81[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11564414	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564418	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11664205	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11664343	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12454980	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12957702	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12957780	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12971156	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550662	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17468213	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468261	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468415	0.82[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17468443	0.82[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17468699	0.82[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
2	chr18:25589800-25611000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:25592400-25611000	Weak transcription	Brain Germinal Matrix	brain
4	chr18:25593600-25612000	Weak transcription	HUVEC	blood vessel
5	chr18:25593800-25612600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:25595200-25615000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr18:25599200-25612000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:25599200-25612000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr18:25599600-25610600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:25600000-25611400	Weak transcription	Osteobl	bone
11	chr18:25600000-25611600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr18:25600000-25619000	Weak transcription	HSMM	muscle
13	chr18:25600800-25611800	Weak transcription	A549	lung
14	chr18:25605200-25611400	Weak transcription	NH-A	brain
15	chr18:25607200-25611800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr18:25609800-25610600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr18:25609800-25611400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:25609800-25621600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr18:25610400-25611600	Enhancers	Fetal Heart	heart
20	chr18:25610400-25612000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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