Variant report

Variant	rs17468443
Chromosome Location	chr18:25628088-25628089
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11083244	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083247	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564295	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11564298	0.89[YRI][hapmap]
rs11564398	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564401	0.95[CEU][hapmap]
rs11564403	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564410	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564414	0.86[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11564418	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11664205	0.87[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11664343	0.86[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1220027	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12454980	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956425	0.82[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12957702	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12957780	0.87[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12971156	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1550662	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468213	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468261	0.87[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17468415	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468699	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25617000-25628800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr18:25618400-25631600	Weak transcription	Fetal Brain Male	brain
3	chr18:25620400-25629200	Weak transcription	Left Ventricle	heart
4	chr18:25621600-25628200	Weak transcription	Fetal Brain Female	brain
5	chr18:25621800-25628200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr18:25625800-25628400	Weak transcription	Liver	Liver
7	chr18:25625800-25628400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr18:25625800-25628400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr18:25625800-25628600	Weak transcription	Fetal Kidney	kidney
10	chr18:25625800-25628800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:25625800-25630800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:25625800-25643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
14	chr18:25626000-25628200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr18:25626000-25628400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr18:25626000-25628600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr18:25626000-25629800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr18:25626000-25643200	Weak transcription	HUVEC	blood vessel
19	chr18:25626200-25628200	Weak transcription	Brain Angular Gyrus	brain
20	chr18:25626200-25628200	Weak transcription	Brain Germinal Matrix	brain
21	chr18:25626200-25628200	Weak transcription	Brain Hippocampus Middle	brain
22	chr18:25626200-25628200	Weak transcription	Brain Substantia Nigra	brain
23	chr18:25626200-25628200	Weak transcription	A549	lung
24	chr18:25626200-25628400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr18:25626200-25628400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr18:25626200-25628400	Weak transcription	Brain Anterior Caudate	brain
27	chr18:25626200-25628800	Weak transcription	Fetal Heart	heart
28	chr18:25626200-25629200	Weak transcription	HSMM	muscle
29	chr18:25626200-25630800	Weak transcription	Osteobl	bone
30	chr18:25626600-25628400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr18:25627200-25628400	Weak transcription	NH-A	brain
32	chr18:25627400-25628400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr18:25627400-25628400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr18:25627400-25628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr18:25627400-25628400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr18:25627400-25628400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr18:25627400-25629800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr18:25627600-25628400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr18:25627600-25628800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr18:25627600-25629000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr18:25627800-25628200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr18:25627800-25629600	Enhancers	HUES48 Cell Line	embryonic stem cell

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