Variant report

Variant	rs11573655
Chromosome Location	chr9:110061452-110061453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110060441..110063203-chr9:110064051..110066274,3	MCF-7	breast:
2	chr9:110049612..110053509-chr9:110059334..110062914,3	K562	blood:
3	chr9:110060491..110063428-chr9:110066349..110068184,2	MCF-7	breast:
4	chr2:154332779..154334411-chr9:110060571..110062881,2	MCF-7	breast:
5	chr9:110054445..110058128-chr9:110059472..110062917,7	K562	blood:
6	chr9:110005542..110008121-chr9:110058915..110061761,2	MCF-7	breast:
7	chr9:110060398..110063289-chr9:110066758..110069603,2	MCF-7	breast:
8	chr9:110043397..110048376-chr9:110058875..110065071,10	K562	blood:
9	chr9:110044258..110048385-chr9:110059208..110064151,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10978789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10978793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11573631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11573652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11573700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12001235	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12001425	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12004883	1.00[CHB][hapmap]
rs12005299	0.93[EUR][1000 genomes]
rs12005522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16912372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724694	0.97[EUR][1000 genomes]
rs56091145	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62567660	0.87[EUR][1000 genomes]
rs62567661	0.87[EUR][1000 genomes]
rs62567691	0.87[EUR][1000 genomes]
rs62567693	0.87[EUR][1000 genomes]
rs62567694	0.87[EUR][1000 genomes]
rs62567696	0.93[EUR][1000 genomes]
rs62567704	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62567738	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73668766	0.93[EUR][1000 genomes]
rs73668780	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7859324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519266	chr9:110049477-110085255	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110047600-110067200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:110048800-110067800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:110048800-110069600	Weak transcription	Fetal Brain Male	brain
4	chr9:110049000-110063000	Enhancers	Liver	Liver
5	chr9:110049000-110063200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:110049000-110063200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:110049200-110067000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:110049400-110067800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:110050200-110063200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:110051200-110066000	Weak transcription	Fetal Intestine Large	intestine
11	chr9:110051200-110067000	Weak transcription	Thymus	Thymus
12	chr9:110051600-110079200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:110052000-110066800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr9:110052600-110063200	Weak transcription	Placenta	Placenta
15	chr9:110052600-110067000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:110052600-110067000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:110052600-110068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:110052600-110068600	Weak transcription	Brain Germinal Matrix	brain
19	chr9:110052600-110068800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:110052600-110069200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:110052800-110066000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:110053400-110068600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:110053600-110063200	Weak transcription	Fetal Thymus	thymus
24	chr9:110053600-110063400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:110055600-110063000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:110055600-110067600	Weak transcription	HSMMtube	muscle
27	chr9:110055600-110068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:110055800-110068600	Weak transcription	Fetal Brain Female	brain
29	chr9:110055800-110068600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr9:110056000-110062600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr9:110056400-110061600	Weak transcription	HSMM	muscle
32	chr9:110056400-110063400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr9:110056800-110061600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:110056800-110062400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:110056800-110065800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:110056800-110068600	Weak transcription	Lung	lung
37	chr9:110057200-110061600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:110057200-110066800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr9:110057200-110067000	Weak transcription	Fetal Stomach	stomach
40	chr9:110057200-110067000	Weak transcription	Left Ventricle	heart
41	chr9:110057200-110068800	Weak transcription	Brain Substantia Nigra	brain
42	chr9:110057200-110079200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr9:110057400-110061600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr9:110057400-110061600	Weak transcription	K562	blood
45	chr9:110057400-110063000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:110057400-110063600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:110057400-110068600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr9:110057400-110068600	Weak transcription	Esophagus	oesophagus
49	chr9:110057400-110068600	Weak transcription	Gastric	stomach
50	chr9:110057400-110074600	Weak transcription	Spleen	Spleen

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