Variant report

Variant	rs7859324
Chromosome Location	chr9:109989135-109989136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:109986937..109989550-chr9:110043797..110045516,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10978789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10978793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11573631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11573652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11573655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs11573700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12001235	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12001425	0.84[EUR][1000 genomes]
rs12004883	1.00[CHB][hapmap]
rs12005299	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12005522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs16912372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs17724694	0.84[EUR][1000 genomes]
rs56091145	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567660	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567661	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567691	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567693	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567694	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567696	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567704	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567738	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73668766	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73668780	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109984200-109990600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:109984800-109989600	Weak transcription	Fetal Stomach	stomach
3	chr9:109985000-109989600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:109985000-109990600	Weak transcription	Fetal Brain Male	brain
5	chr9:109985000-109990800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:109985400-109989600	Weak transcription	Fetal Intestine Small	intestine
7	chr9:109985400-109989600	Weak transcription	Fetal Lung	lung
8	chr9:109985800-109990000	Weak transcription	HepG2	liver
9	chr9:109987000-109990000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:109988600-109989600	Weak transcription	Fetal Intestine Large	intestine

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