Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:109991080..109992834-chr9:110102053..110103611,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10978789	0.81[EUR][1000 genomes]
rs10978793	0.84[EUR][1000 genomes]
rs11573631	0.87[EUR][1000 genomes]
rs11573652	0.87[EUR][1000 genomes]
rs11573655	0.87[EUR][1000 genomes]
rs11573700	0.87[EUR][1000 genomes]
rs12001235	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12001425	0.84[EUR][1000 genomes]
rs12005299	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12005522	0.84[EUR][1000 genomes]
rs16912372	0.87[EUR][1000 genomes]
rs17724694	0.84[EUR][1000 genomes]
rs56091145	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567661	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567691	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567693	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567694	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567696	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567704	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567738	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73668766	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73668780	0.84[EUR][1000 genomes]
rs7859324	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109990000-109993600	Weak transcription	Psoas Muscle	Psoas
2	chr9:109990600-109992600	Enhancers	Fetal Brain Male	brain
3	chr9:109990600-109997400	Weak transcription	Liver	Liver
4	chr9:109991600-109992600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:109992000-109995800	Weak transcription	Fetal Lung	lung
6	chr9:109992200-109992600	Weak transcription	Fetal Stomach	stomach

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