Variant report

Variant	rs56091145
Chromosome Location	chr9:110012990-110012991
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110000595..110013733-chr9:110042800..110048700,27	MCF-7	breast:
2	chr9:110012891..110014822-chr9:110023736..110026167,2	MCF-7	breast:
3	chr9:110007992..110013194-chr9:110021107..110025881,5	MCF-7	breast:
4	chr9:110007276..110009572-chr9:110012956..110014515,2	K562	blood:
5	chr9:110011669..110017049-chr9:110043880..110047775,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10978789	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10978793	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11573631	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11573652	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11573655	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11573700	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12001235	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12001425	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12005299	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12005522	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16912372	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17724694	0.90[EUR][1000 genomes]
rs62567660	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567661	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567691	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567693	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567694	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62567696	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567704	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567738	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73668766	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73668780	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7859324	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110006600-110013000	Enhancers	Placenta	Placenta
2	chr9:110006600-110013600	Weak transcription	NH-A	brain
3	chr9:110007000-110022600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:110008800-110014200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:110008800-110014400	Weak transcription	Fetal Kidney	kidney
6	chr9:110009800-110015400	Enhancers	Fetal Muscle Leg	muscle
7	chr9:110010000-110014200	Enhancers	HSMMtube	muscle
8	chr9:110010400-110013000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:110010600-110013600	Weak transcription	Psoas Muscle	Psoas
10	chr9:110011200-110013800	Enhancers	NHDF-Ad	bronchial
11	chr9:110011200-110014200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:110011400-110014600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:110011800-110013600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:110011800-110013600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:110011800-110013600	Weak transcription	Ovary	ovary
16	chr9:110011800-110013800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:110011800-110013800	Weak transcription	Adipose Nuclei	Adipose
18	chr9:110011800-110014200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:110012000-110013600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:110012000-110014200	Enhancers	HepG2	liver
21	chr9:110012200-110013600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:110012200-110013600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:110012200-110014000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:110012200-110014200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:110012400-110013200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:110012400-110013400	Weak transcription	HSMM	muscle
27	chr9:110012400-110013600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:110012400-110013600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:110012400-110013600	Weak transcription	Pancreas	Pancrea
30	chr9:110012400-110013600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:110012400-110013600	Weak transcription	HMEC	breast
32	chr9:110012400-110013600	Weak transcription	Osteobl	bone
33	chr9:110012400-110013800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:110012400-110014000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:110012400-110014200	Weak transcription	Liver	Liver
36	chr9:110012400-110014200	Weak transcription	A549	lung
37	chr9:110012400-110014400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:110012400-110014400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:110012400-110022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr9:110012600-110013000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:110012600-110013000	Weak transcription	NHLF	lung
42	chr9:110012600-110013800	Weak transcription	NHEK	skin

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