Variant report
| Variant | rs62567693 |
|---|---|
| Chromosome Location | chr9:109999336-109999337 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
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rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10978789 | 0.81[EUR][1000 genomes] |
| rs10978793 | 0.84[EUR][1000 genomes] |
| rs11573631 | 0.87[EUR][1000 genomes] |
| rs11573652 | 0.87[EUR][1000 genomes] |
| rs11573655 | 0.87[EUR][1000 genomes] |
| rs11573700 | 0.87[EUR][1000 genomes] |
| rs12001235 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12001425 | 0.84[EUR][1000 genomes] |
| rs12005299 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12005522 | 0.84[EUR][1000 genomes] |
| rs16912372 | 0.87[EUR][1000 genomes] |
| rs17724694 | 0.84[EUR][1000 genomes] |
| rs56091145 | 0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62567660 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62567661 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62567691 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62567694 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62567696 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62567704 | 0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62567738 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73668766 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73668780 | 0.84[EUR][1000 genomes] |
| rs7859324 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869351 | chr9:109593212-110191170 | Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | nsv530948 | chr9:109760752-110413602 | Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| 3 | nsv831682 | chr9:109937181-110075453 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv893698 | chr9:109998563-110052660 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:109998600-110006800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr9:109999200-110008600 | Weak transcription | Liver | Liver |
