Variant report

Variant	rs11586451
Chromosome Location	chr1:209335154-209335155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LAMB3-5	chr1:209335060-209335176	NONHSAT009183

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11586407	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12722814	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12755287	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933610	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1933612	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933619	0.84[ASN][1000 genomes]
rs2250701	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2489651	0.84[ASN][1000 genomes]
rs2788161	0.84[ASN][1000 genomes]
rs2788162	0.84[ASN][1000 genomes]
rs2788168	0.84[ASN][1000 genomes]
rs2788170	0.84[ASN][1000 genomes]
rs2970555	0.84[ASN][1000 genomes]
rs2970556	0.84[ASN][1000 genomes]
rs2996688	0.84[ASN][1000 genomes]
rs34523921	0.84[ASN][1000 genomes]
rs34944110	0.82[ASN][1000 genomes]
rs4402132	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4518909	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6658956	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6672407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66763810	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6678963	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6692414	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6704132	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71636106	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873137	chr1:209301571-209338673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv522816	chr1:209325038-209342622	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209329600-209335800	Weak transcription	HSMM	muscle
2	chr1:209334200-209335600	Weak transcription	HSMMtube	muscle
3	chr1:209334200-209335800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:209335000-209335200	Enhancers	HUES64 Cell Line	embryonic stem cell

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