Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:209391225..209393243-chr1:209555461..209557168,2	MCF-7	breast:
2	chr1:209390755..209393055-chr1:209601182..209604562,3	MCF-7	breast:
3	chr1:209388184..209391480-chr1:209391851..209395269,3	MCF-7	breast:
4	chr1:209390523..209392152-chr1:209605244..209606855,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11586407	0.82[ASN][1000 genomes]
rs11586451	0.84[ASN][1000 genomes]
rs12722814	0.82[ASN][1000 genomes]
rs12755287	0.82[ASN][1000 genomes]
rs1933612	0.82[ASN][1000 genomes]
rs1933619	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788158	0.86[EUR][1000 genomes]
rs2788159	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2788161	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788162	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788168	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788170	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800919	0.89[EUR][1000 genomes]
rs2970555	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970556	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970560	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2970562	0.83[EUR][1000 genomes]
rs2970563	0.87[EUR][1000 genomes]
rs2996683	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2996688	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34523921	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34944110	0.97[ASN][1000 genomes]
rs4396124	0.94[ASN][1000 genomes]
rs4402132	0.84[ASN][1000 genomes]
rs6658956	0.82[ASN][1000 genomes]
rs6672407	0.84[ASN][1000 genomes]
rs66763810	0.94[ASN][1000 genomes]
rs6678963	0.82[ASN][1000 genomes]
rs6692414	0.84[ASN][1000 genomes]
rs6704132	0.82[ASN][1000 genomes]
rs71636106	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209389400-209392000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:209389800-209392200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:209390200-209392800	Weak transcription	Esophagus	oesophagus
4	chr1:209391400-209392200	Weak transcription	Fetal Brain Male	brain
5	chr1:209391400-209392400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:209391400-209392800	Enhancers	Dnd41	blood
7	chr1:209391400-209393200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:209391400-209394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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