Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209382422..209384753-chr1:209511940..209513719,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11586407	0.82[ASN][1000 genomes]
rs11586451	0.84[ASN][1000 genomes]
rs12722814	0.82[ASN][1000 genomes]
rs12755287	0.82[ASN][1000 genomes]
rs1933612	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1933619	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250701	1.00[JPT][hapmap]
rs2489651	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788158	0.82[EUR][1000 genomes]
rs2788159	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2788162	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788168	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788170	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800919	0.86[EUR][1000 genomes]
rs2970555	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970556	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970560	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2970563	0.84[EUR][1000 genomes]
rs2996683	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2996687	0.81[EUR][1000 genomes]
rs2996688	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34523921	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34944110	0.97[ASN][1000 genomes]
rs4396124	0.94[ASN][1000 genomes]
rs4402132	0.84[ASN][1000 genomes]
rs6658956	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6672407	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs66763810	0.94[ASN][1000 genomes]
rs6678963	0.82[ASN][1000 genomes]
rs6692414	0.84[ASN][1000 genomes]
rs6704132	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs71636106	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209381800-209382600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:209381800-209382600	Enhancers	Fetal Brain Female	brain
3	chr1:209381800-209382600	Enhancers	Osteobl	bone
4	chr1:209382200-209383200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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