The 2.0 version of rSNPBase

Variant report

Variant rs11589113
Chromosome Location chr1:179057504-179057505
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179052200-179062200 Weak transcription Small Intestine intestine
2 chr1:179052400-179058800 Weak transcription NH-A brain
3 chr1:179052400-179059000 Weak transcription Psoas Muscle Psoas
4 chr1:179052400-179060000 Weak transcription Brain Angular Gyrus brain
5 chr1:179052400-179060200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:179052400-179060800 Weak transcription Fetal Lung lung
7 chr1:179052400-179062600 Weak transcription Fetal Kidney kidney
8 chr1:179052600-179058800 Weak transcription NHDF-Ad bronchial
9 chr1:179052600-179064200 Weak transcription Fetal Brain Male brain
10 chr1:179052800-179059400 Weak transcription Fetal Heart heart
11 chr1:179053000-179059600 Weak transcription HSMM muscle
12 chr1:179053000-179060400 Strong transcription Stomach Smooth Muscle stomach
13 chr1:179053000-179072200 Strong transcription Primary T cells from cord blood blood
14 chr1:179053200-179057600 Weak transcription HMEC breast
15 chr1:179053200-179057600 Weak transcription HSMMtube muscle
16 chr1:179053200-179062400 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr1:179053200-179063000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:179053200-179064000 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr1:179053200-179067600 Strong transcription Primary hematopoietic stem cells short term culture blood
20 chr1:179053200-179071000 Strong transcription NHEK skin
21 chr1:179053200-179096000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr1:179053400-179058200 Strong transcription K562 blood
23 chr1:179053400-179059000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:179053400-179062000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:179053400-179062200 Weak transcription Stomach Mucosa stomach
26 chr1:179053400-179067400 Strong transcription Fetal Intestine Small intestine
27 chr1:179053600-179060000 Strong transcription A549 lung
28 chr1:179053800-179057800 Strong transcription Brain Anterior Caudate brain
29 chr1:179053800-179058000 Strong transcription Skeletal Muscle Male skeletal muscle
30 chr1:179053800-179059400 Strong transcription NHLF lung
31 chr1:179053800-179059800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:179053800-179060400 Strong transcription Fetal Stomach stomach
33 chr1:179053800-179060600 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:179053800-179066600 Strong transcription Sigmoid Colon Sigmoid Colon
35 chr1:179053800-179066800 Strong transcription Primary T regulatory cells fromperipheralblood blood
36 chr1:179053800-179067200 Strong transcription Thymus Thymus
37 chr1:179053800-179069000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:179053800-179074600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:179054000-179057800 Genic enhancers Liver Liver
40 chr1:179054000-179067600 Strong transcription Fetal Intestine Large intestine
41 chr1:179054000-179071000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:179054000-179074800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:179054000-179077200 Weak transcription Primary T helper naive cells from peripheral blood blood
44 chr1:179054000-179079400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr1:179054200-179057600 Genic enhancers GM12878-XiMat blood
46 chr1:179054200-179058000 Strong transcription Skeletal Muscle Female skeletal muscle
47 chr1:179054400-179058000 Strong transcription Right Ventricle heart
48 chr1:179054400-179067200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr1:179054400-179067800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
50 chr1:179054600-179059800 Strong transcription Osteobl bone

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Last update: Aug 31, 2015