Variant report

Variant	rs12133704
Chromosome Location	chr1:179140698-179140699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179138878..179141037-chr1:179146170..179148483,2	K562	blood:
2	chr1:179140388..179142665-chr1:179148351..179150458,2	MCF-7	breast:
3	chr1:179138923..179140976-chr1:179155804..179157693,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10913700	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913704	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11584312	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11584434	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11584705	1.00[ASN][1000 genomes]
rs11589113	1.00[ASN][1000 genomes]
rs12120194	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122267	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12126360	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12127868	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12128338	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12128447	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129054	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132268	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133855	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12133900	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12134611	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12140256	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12145184	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1318056	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490311	0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs16853640	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17362373	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2636278	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs28913570	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914503	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914510	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56949555	1.00[ASN][1000 genomes]
rs57903944	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60358932	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73038859	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044740	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044744	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044747	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044749	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044753	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044761	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044765	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044767	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044776	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73044778	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73044802	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179117800-179186000	Weak transcription	Fetal Stomach	stomach
2	chr1:179122000-179189400	Weak transcription	Primary B cells from cord blood	blood
3	chr1:179122400-179153000	Weak transcription	Primary T cells from cord blood	blood
4	chr1:179122800-179141600	Weak transcription	Fetal Intestine Large	intestine
5	chr1:179134000-179146600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:179134000-179169000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:179136400-179144400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:179136800-179146200	Weak transcription	Fetal Heart	heart
9	chr1:179138200-179144400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:179139200-179143800	Weak transcription	Brain Angular Gyrus	brain
11	chr1:179139400-179143600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:179139400-179143800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:179139400-179144200	Weak transcription	Adipose Nuclei	Adipose
14	chr1:179139400-179144200	Weak transcription	Brain Substantia Nigra	brain
15	chr1:179139400-179144200	Weak transcription	HSMMtube	muscle
16	chr1:179139400-179144200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr1:179139400-179144400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:179139400-179144400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:179139400-179144400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:179139400-179144400	Weak transcription	Aorta	Aorta
21	chr1:179139400-179144400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:179139400-179144400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:179139400-179144400	Weak transcription	Colon Smooth Muscle	Colon
24	chr1:179139400-179144400	Weak transcription	Ovary	ovary
25	chr1:179139400-179144400	Weak transcription	Osteobl	bone
26	chr1:179139400-179146200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:179139400-179146400	Weak transcription	Right Atrium	heart
28	chr1:179139400-179157200	Weak transcription	K562	blood
29	chr1:179139400-179158800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:179139400-179196800	Weak transcription	Pancreas	Pancrea
31	chr1:179139600-179143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:179139600-179143800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:179139600-179143800	Weak transcription	Brain Anterior Caudate	brain
34	chr1:179139600-179144000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:179139600-179144200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:179139600-179144200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:179139600-179144200	Weak transcription	Brain Hippocampus Middle	brain
38	chr1:179139600-179144200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:179139600-179144200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:179139600-179144200	Weak transcription	A549	lung
41	chr1:179139600-179144200	Weak transcription	Hela-S3	cervix
42	chr1:179139600-179144200	Weak transcription	HMEC	breast
43	chr1:179139600-179144200	Weak transcription	HSMM	muscle
44	chr1:179139600-179144200	Weak transcription	NH-A	brain
45	chr1:179139600-179144200	Weak transcription	NHEK	skin
46	chr1:179139600-179144200	Weak transcription	NHLF	lung
47	chr1:179139800-179143600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr1:179139800-179143600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr1:179139800-179143800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:179139800-179143800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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