Variant report

Variant	rs73044802
Chromosome Location	chr1:179211312-179211313
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10913704	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11584312	0.83[AMR][1000 genomes]
rs11584434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120194	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12122267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126360	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12127868	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12128338	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12128447	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12128920	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12132268	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12133704	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12133855	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12133900	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134611	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12140256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12145184	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318056	0.83[AMR][1000 genomes]
rs17362373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28913570	0.83[AMR][1000 genomes]
rs57903944	0.81[ASN][1000 genomes]
rs60358932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038859	0.83[AMR][1000 genomes]
rs73038874	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73038878	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73044740	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044744	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044747	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044749	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044753	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044761	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044765	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73044767	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73044776	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73044778	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179203800-179212400	Weak transcription	HepG2	liver
2	chr1:179210000-179211400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:179210600-179211400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:179210600-179211400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:179210600-179211400	Enhancers	Brain Substantia Nigra	brain
6	chr1:179210600-179211600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:179211000-179211600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:179211200-179211400	Enhancers	Brain Hippocampus Middle	brain
9	chr1:179211200-179211400	Enhancers	Brain Inferior Temporal Lobe	brain

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