Variant report

Variant	rs12140256
Chromosome Location	chr1:179189328-179189329
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179189295..179193775-chr1:179196197..179201101,5	K562	blood:
2	chr1:179187242..179191261-chr1:179196503..179201085,5	MCF-7	breast:
3	chr1:179188599..179190144-chr1:179197953..179200570,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143322	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10913700	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10913704	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11584312	0.83[AMR][1000 genomes]
rs11584434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12120194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12122267	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12126360	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12127868	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128338	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12128447	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12128920	0.83[AMR][1000 genomes]
rs12129054	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12132268	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12133704	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12133855	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133900	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12134611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145184	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1318056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs1490311	1.00[ASW][hapmap];0.85[MEX][hapmap];0.85[YRI][hapmap]
rs16853640	0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs17362373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2636278	0.95[LWK][hapmap];1.00[YRI][hapmap]
rs28913570	0.83[AMR][1000 genomes]
rs57903944	1.00[ASN][1000 genomes]
rs60358932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73038859	0.83[AMR][1000 genomes]
rs73038874	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73038878	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73044740	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044744	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044747	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044749	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044753	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044761	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044765	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044767	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044802	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179122000-179189400	Weak transcription	Primary B cells from cord blood	blood
2	chr1:179139400-179196800	Weak transcription	Pancreas	Pancrea
3	chr1:179157400-179197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:179157400-179197600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:179169000-179197400	Weak transcription	NHEK	skin
6	chr1:179170200-179197200	Weak transcription	Fetal Intestine Large	intestine
7	chr1:179172800-179189800	Weak transcription	Primary T cells from cord blood	blood
8	chr1:179176200-179195800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:179176200-179195800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:179176200-179196600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:179176200-179197600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:179176400-179196200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:179176400-179197000	Weak transcription	Fetal Brain Male	brain
14	chr1:179176400-179197400	Weak transcription	Fetal Lung	lung
15	chr1:179176400-179197600	Weak transcription	Left Ventricle	heart
16	chr1:179176600-179196200	Weak transcription	Brain Hippocampus Middle	brain
17	chr1:179176800-179189400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:179177000-179196000	Weak transcription	Fetal Brain Female	brain
19	chr1:179177000-179197600	Weak transcription	HSMMtube	muscle
20	chr1:179177400-179197200	Weak transcription	Brain Germinal Matrix	brain
21	chr1:179177800-179196600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr1:179178000-179196000	Weak transcription	Aorta	Aorta
23	chr1:179178000-179197600	Weak transcription	Gastric	stomach
24	chr1:179178400-179189400	Weak transcription	HepG2	liver
25	chr1:179178400-179189600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:179178400-179197600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:179178600-179197600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr1:179178600-179197600	Weak transcription	NH-A	brain
29	chr1:179178800-179197400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr1:179179200-179189800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr1:179179200-179196000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:179179200-179197400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:179179800-179197200	Weak transcription	Thymus	Thymus
34	chr1:179180200-179197600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr1:179180800-179197200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr1:179181600-179197600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:179182600-179189800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr1:179183200-179196000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:179183400-179193000	Weak transcription	Fetal Muscle Leg	muscle
40	chr1:179184200-179196800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr1:179184400-179193400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:179184400-179197600	Weak transcription	Fetal Thymus	thymus
43	chr1:179184600-179189600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr1:179184600-179196200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr1:179184600-179196600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr1:179184800-179197600	Weak transcription	HMEC	breast
47	chr1:179185200-179194200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:179185400-179190000	Weak transcription	Brain Substantia Nigra	brain
49	chr1:179185400-179197400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr1:179185600-179196400	Weak transcription	Brain Cingulate Gyrus	brain

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