The 2.0 version of rSNPBase

Variant report

Variant rs1490311
Chromosome Location chr1:179075755-179075756
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179053200-179096000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:179054000-179077200 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:179054000-179079400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr1:179057200-179076800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr1:179059200-179096400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:179059400-179090400 Strong transcription HUVEC blood vessel
7 chr1:179061400-179090400 Strong transcription HSMM muscle
8 chr1:179061600-179076400 Weak transcription Right Atrium heart
9 chr1:179061600-179076600 Strong transcription Muscle Satellite Cultured Cells --
10 chr1:179062000-179088000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:179063200-179112000 Weak transcription Fetal Kidney kidney
12 chr1:179063400-179077000 Weak transcription Stomach Mucosa stomach
13 chr1:179064200-179078200 Weak transcription Right Ventricle heart
14 chr1:179064600-179077200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:179064800-179075800 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:179064800-179077000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr1:179064800-179079200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:179064800-179097800 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr1:179065000-179075800 Weak transcription Brain Angular Gyrus brain
20 chr1:179065000-179077400 Weak transcription Colonic Mucosa Colon
21 chr1:179065000-179078000 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr1:179065400-179076200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:179065400-179076200 Weak transcription Colon Smooth Muscle Colon
24 chr1:179065400-179076800 Weak transcription Small Intestine intestine
25 chr1:179065600-179075800 Weak transcription Primary T helper naive cells fromperipheralblood blood
26 chr1:179065800-179076400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr1:179066400-179076200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr1:179066400-179076800 Weak transcription Primary T helper cells fromperipheralblood blood
29 chr1:179066400-179077200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr1:179066600-179075800 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr1:179066600-179076200 Weak transcription Brain Substantia Nigra brain
32 chr1:179066600-179076400 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr1:179066600-179076400 Weak transcription Gastric stomach
34 chr1:179066600-179076400 Weak transcription Pancreas Pancrea
35 chr1:179066600-179076400 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr1:179066600-179076400 Weak transcription Spleen Spleen
37 chr1:179066600-179076800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr1:179066600-179076800 Weak transcription Esophagus oesophagus
39 chr1:179066800-179075800 Weak transcription Primary T cells fromperipheralblood blood
40 chr1:179066800-179075800 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:179066800-179076000 Weak transcription Rectal Smooth Muscle rectum
42 chr1:179066800-179076200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
43 chr1:179066800-179076200 Weak transcription Primary B cells from cord blood blood
44 chr1:179066800-179076200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
45 chr1:179066800-179076400 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr1:179066800-179076600 Weak transcription GM12878-XiMat blood
47 chr1:179066800-179077200 Weak transcription Primary neutrophils fromperipheralblood blood
48 chr1:179067000-179076000 Weak transcription Ovary ovary
49 chr1:179067000-179076200 Weak transcription Brain Cingulate Gyrus brain
50 chr1:179067000-179076400 Weak transcription H9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015