Variant report

Variant	rs28914503
Chromosome Location	chr1:179122459-179122460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179108694..179110499-chr1:179120494..179123045,2	MCF-7	breast:
2	chr1:179122193..179124932-chr1:179127076..179128871,2	K562	blood:
3	chr1:179121378..179123693-chr1:179125913..179128576,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10913700	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913704	0.80[EUR][1000 genomes]
rs11584312	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11584705	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11589113	1.00[ASN][1000 genomes]
rs12120194	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126360	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12128447	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129054	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132268	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133704	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318056	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490311	1.00[ASN][1000 genomes]
rs16853640	1.00[ASN][1000 genomes]
rs28913570	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28913877	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28914510	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56949555	1.00[ASN][1000 genomes]
rs57903944	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73038859	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038874	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038878	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044740	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044744	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044747	0.80[EUR][1000 genomes]
rs73044749	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044753	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044761	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044765	0.80[EUR][1000 genomes]
rs73044767	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011462	chr1:179117101-179128290	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1011210	chr1:179117101-179128676	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179099600-179122600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:179112200-179124600	Weak transcription	Left Ventricle	heart
3	chr1:179112400-179133000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:179112400-179139000	Weak transcription	K562	blood
5	chr1:179113200-179133000	Weak transcription	Hela-S3	cervix
6	chr1:179116200-179122600	Weak transcription	NHLF	lung
7	chr1:179116200-179124000	Weak transcription	Osteobl	bone
8	chr1:179116200-179124400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:179116200-179133000	Weak transcription	NHDF-Ad	bronchial
10	chr1:179116400-179133400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:179116600-179123400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:179117800-179133000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:179117800-179186000	Weak transcription	Fetal Stomach	stomach
14	chr1:179119000-179122600	Weak transcription	NH-A	brain
15	chr1:179119000-179135200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr1:179119600-179133000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:179119800-179123800	Enhancers	Liver	Liver
18	chr1:179120000-179122800	Enhancers	Fetal Intestine Large	intestine
19	chr1:179120200-179133800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:179121000-179122600	Enhancers	Primary B cells from peripheral blood	blood
21	chr1:179121000-179122600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr1:179121000-179125200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:179121200-179123000	Enhancers	Fetal Intestine Small	intestine
24	chr1:179121200-179123000	Enhancers	Psoas Muscle	Psoas
25	chr1:179121200-179136200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:179121400-179122600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr1:179121400-179122800	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr1:179121400-179122800	Enhancers	Pancreas	Pancrea
29	chr1:179121400-179123000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr1:179121400-179123000	Enhancers	HSMM	muscle
31	chr1:179121400-179123800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr1:179121600-179125200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:179121600-179125800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:179121800-179122800	Enhancers	Adipose Nuclei	Adipose
35	chr1:179121800-179123400	Enhancers	Colon Smooth Muscle	Colon
36	chr1:179121800-179124200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:179121800-179126000	Enhancers	HepG2	liver
38	chr1:179121800-179135800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr1:179121800-179138400	Weak transcription	Aorta	Aorta
40	chr1:179122000-179123200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr1:179122000-179123400	Enhancers	A549	lung
42	chr1:179122000-179124600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr1:179122000-179135000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr1:179122000-179139000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr1:179122000-179189400	Weak transcription	Primary B cells from cord blood	blood
46	chr1:179122200-179122800	Enhancers	Ovary	ovary
47	chr1:179122400-179122600	Enhancers	HUVEC	blood vessel
48	chr1:179122400-179122800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:179122400-179122800	Enhancers	Fetal Lung	lung
50	chr1:179122400-179122800	Enhancers	Right Atrium	heart

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