Variant report

Variant	rs12126360
Chromosome Location	chr1:179148739-179148740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179140388..179142665-chr1:179148351..179150458,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10913700	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10913704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11584312	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11584434	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11584705	0.89[ASN][1000 genomes]
rs11589113	0.89[ASN][1000 genomes]
rs12120194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12122267	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12127868	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12128338	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12128447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12129054	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12132268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12133704	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12133855	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12133900	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12134611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12140256	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12145184	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1318056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1490311	1.00[ASW][hapmap];0.85[MEX][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs16853640	0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs17362373	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2636278	0.89[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs28913570	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28914503	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28914510	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56949555	0.89[ASN][1000 genomes]
rs57903944	0.86[AMR][1000 genomes]
rs60358932	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73038859	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73038874	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73038878	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73044740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73044744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73044747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73044753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73044761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73044765	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044776	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044778	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044802	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179117800-179186000	Weak transcription	Fetal Stomach	stomach
2	chr1:179122000-179189400	Weak transcription	Primary B cells from cord blood	blood
3	chr1:179122400-179153000	Weak transcription	Primary T cells from cord blood	blood
4	chr1:179134000-179169000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:179139400-179157200	Weak transcription	K562	blood
6	chr1:179139400-179158800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:179139400-179196800	Weak transcription	Pancreas	Pancrea
8	chr1:179144000-179149000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:179144800-179149000	Enhancers	NHDF-Ad	bronchial
10	chr1:179144800-179159200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:179145000-179158600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr1:179145000-179159800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:179145000-179159800	Weak transcription	Brain Angular Gyrus	brain
14	chr1:179145400-179159000	Weak transcription	Right Ventricle	heart
15	chr1:179146000-179148800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:179146000-179149200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:179146000-179150600	Enhancers	HSMMtube	muscle
18	chr1:179146200-179148800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:179146200-179148800	Enhancers	NH-A	brain
20	chr1:179146200-179150800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:179146400-179150600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:179146600-179150200	Weak transcription	Brain Substantia Nigra	brain
23	chr1:179146800-179148800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:179146800-179175600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:179147000-179149600	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:179147000-179150000	Weak transcription	Brain Anterior Caudate	brain
27	chr1:179147200-179150400	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:179147200-179150800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:179147400-179150000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr1:179147400-179150600	Enhancers	HMEC	breast
31	chr1:179147600-179149600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:179147600-179160000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr1:179147600-179174600	Weak transcription	Psoas Muscle	Psoas
34	chr1:179147800-179149400	Enhancers	A549	lung
35	chr1:179147800-179149800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:179148000-179148800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:179148000-179148800	Enhancers	HUVEC	blood vessel
38	chr1:179148000-179149000	Enhancers	NHLF	lung
39	chr1:179148000-179150800	Enhancers	NHEK	skin
40	chr1:179148000-179186000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:179148400-179148800	Enhancers	HSMM	muscle
42	chr1:179148400-179150000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:179148400-179185800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:179148600-179148800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr1:179148600-179149400	Weak transcription	Osteobl	bone
46	chr1:179148600-179149800	Enhancers	Ovary	ovary

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