Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10913700	1.00[CEU][hapmap]
rs11584434	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12120194	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap]
rs12122267	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12126360	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap]
rs12127868	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12128338	0.90[AMR][1000 genomes]
rs12129054	1.00[CEU][hapmap]
rs12133704	1.00[CEU][hapmap]
rs12133855	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs12133900	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12134611	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs12140256	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs12145184	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1318056	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.84[YRI][hapmap]
rs1490311	0.85[MEX][hapmap];0.82[YRI][hapmap]
rs16853640	0.91[GIH][hapmap];0.82[MEX][hapmap]
rs17362373	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2636278	0.84[YRI][hapmap]
rs60358932	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73044776	0.83[AMR][1000 genomes]
rs73044778	0.83[AMR][1000 genomes]
rs73044802	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179232200-179241800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:179233000-179234200	Enhancers	Fetal Kidney	kidney

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