Variant report

Variant	rs11589166
Chromosome Location	chr1:56334217-56334218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10888945	0.84[ASN][1000 genomes]
rs11206684	0.80[EUR][1000 genomes]
rs11576242	0.84[EUR][1000 genomes]
rs11578335	0.84[EUR][1000 genomes]
rs11578498	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11579038	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11581648	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11583537	0.84[EUR][1000 genomes]
rs11586123	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11587235	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11590983	0.84[EUR][1000 genomes]
rs11800773	0.84[EUR][1000 genomes]
rs12062107	0.83[ASN][1000 genomes]
rs12081543	0.84[EUR][1000 genomes]
rs17112873	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17112980	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17113009	0.98[EUR][1000 genomes]
rs17113019	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34631693	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41285920	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4450055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565759	0.84[EUR][1000 genomes]
rs4595404	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56663249	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56794337	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57046577	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57145918	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58221753	0.98[EUR][1000 genomes]
rs59699301	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61064012	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61497682	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6588578	0.84[EUR][1000 genomes]
rs6678002	0.87[EUR][1000 genomes]
rs74072586	0.84[EUR][1000 genomes]
rs74072587	0.84[EUR][1000 genomes]
rs7538057	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv947261	chr1:56328792-56335482	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56326000-56342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56331800-56336200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56332400-56339200	Enhancers	NHDF-Ad	bronchial
4	chr1:56333000-56334400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr1:56333000-56335200	Enhancers	Fetal Kidney	kidney
6	chr1:56333200-56336200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:56333200-56336400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56333400-56334600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:56333400-56336600	Enhancers	Osteobl	bone
10	chr1:56333600-56334400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:56333600-56336000	Weak transcription	Fetal Intestine Small	intestine
12	chr1:56333600-56336200	Enhancers	Fetal Heart	heart
13	chr1:56333600-56336400	Enhancers	NHLF	lung
14	chr1:56333800-56334600	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:56333800-56334600	Weak transcription	Psoas Muscle	Psoas
16	chr1:56333800-56334800	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:56333800-56334800	Weak transcription	Placenta	Placenta
18	chr1:56333800-56340000	Weak transcription	Aorta	Aorta
19	chr1:56334000-56335200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:56334000-56336000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:56334000-56336000	Weak transcription	Fetal Intestine Large	intestine
22	chr1:56334200-56334400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:56334200-56334600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:56334200-56335200	Enhancers	Fetal Lung	lung

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