Variant report

Variant	rs11578335
Chromosome Location	chr1:56383982-56383983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRKAA2-11	chr1:56383981-56384141	NONHSAT003427

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11206684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206686	0.96[ASN][1000 genomes]
rs11576242	1.00[EUR][1000 genomes]
rs11578498	0.80[EUR][1000 genomes]
rs11579038	0.80[EUR][1000 genomes]
rs11581648	0.84[EUR][1000 genomes]
rs11583130	0.96[ASN][1000 genomes]
rs11583537	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11586123	0.80[EUR][1000 genomes]
rs11587235	0.80[EUR][1000 genomes]
rs11589166	0.84[EUR][1000 genomes]
rs11590983	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11800773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11804906	0.96[ASN][1000 genomes]
rs12081543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119831	0.92[ASN][1000 genomes]
rs17112873	0.80[EUR][1000 genomes]
rs17112980	0.80[EUR][1000 genomes]
rs17113009	0.82[EUR][1000 genomes]
rs17113019	0.82[EUR][1000 genomes]
rs34631693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285920	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4450055	0.80[EUR][1000 genomes]
rs4550097	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4565759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4595404	0.82[EUR][1000 genomes]
rs56663249	0.96[EUR][1000 genomes]
rs56686347	0.96[ASN][1000 genomes]
rs57046577	0.84[EUR][1000 genomes]
rs57145918	0.80[EUR][1000 genomes]
rs58221753	0.82[EUR][1000 genomes]
rs59699301	0.84[EUR][1000 genomes]
rs61064012	0.96[EUR][1000 genomes]
rs61497682	0.87[EUR][1000 genomes]
rs6588578	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588581	0.96[ASN][1000 genomes]
rs6588591	0.96[ASN][1000 genomes]
rs6660000	0.96[ASN][1000 genomes]
rs6670350	0.96[ASN][1000 genomes]
rs6678002	0.86[EUR][1000 genomes]
rs6684599	0.96[ASN][1000 genomes]
rs6695436	0.92[ASN][1000 genomes]
rs6699283	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74072586	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74072587	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538008	0.96[ASN][1000 genomes]
rs7538057	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56381600-56386400	Weak transcription	Placenta	Placenta
2	chr1:56382600-56386400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:56382600-56393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56382800-56392800	Weak transcription	Fetal Lung	lung
5	chr1:56383000-56393400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:56383200-56386200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:56383400-56384000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:56383800-56384600	Enhancers	Fetal Heart	heart

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