Variant report

Variant	rs6588581
Chromosome Location	chr1:56393537-56393538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10888945	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11206684	0.96[ASN][1000 genomes]
rs11206686	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578335	0.96[ASN][1000 genomes]
rs11583130	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583537	0.92[ASN][1000 genomes]
rs11590983	0.98[ASN][1000 genomes]
rs11800773	0.96[ASN][1000 genomes]
rs11804906	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062107	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12081543	0.96[ASN][1000 genomes]
rs12119683	0.99[EUR][1000 genomes]
rs12119831	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12744110	0.99[EUR][1000 genomes]
rs34631693	0.96[ASN][1000 genomes]
rs41285920	0.98[ASN][1000 genomes]
rs4468206	0.98[EUR][1000 genomes]
rs4550097	0.92[ASN][1000 genomes]
rs4565759	0.96[ASN][1000 genomes]
rs4573554	0.98[EUR][1000 genomes]
rs4927274	0.99[EUR][1000 genomes]
rs4927275	0.98[EUR][1000 genomes]
rs4927276	0.98[EUR][1000 genomes]
rs56686347	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588578	0.96[ASN][1000 genomes]
rs6588591	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660000	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670350	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684599	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695436	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6699283	0.92[ASN][1000 genomes]
rs72904468	0.86[EUR][1000 genomes]
rs74072586	0.96[ASN][1000 genomes]
rs74072587	0.96[ASN][1000 genomes]
rs7538008	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538057	0.98[ASN][1000 genomes]
rs7540772	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56386800-56395400	Weak transcription	Placenta	Placenta
2	chr1:56386800-56396600	Weak transcription	Esophagus	oesophagus
3	chr1:56392800-56394800	Enhancers	Fetal Lung	lung
4	chr1:56393000-56393600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:56393000-56394000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:56393200-56395400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56393200-56395400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:56393200-56395400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:56393400-56393600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:56393400-56393600	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:56393400-56393800	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:56393400-56395000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:56393400-56395200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:56393400-56398000	Enhancers	Adipose Nuclei	Adipose

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