Variant report

Variant	rs6588591
Chromosome Location	chr1:56402956-56402957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10888945	0.83[AMR][1000 genomes]
rs11206684	0.96[ASN][1000 genomes]
rs11206686	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206690	0.84[GIH][hapmap];1.00[MEX][hapmap]
rs11578335	0.96[ASN][1000 genomes]
rs11583130	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583537	0.92[ASN][1000 genomes]
rs11590983	0.98[ASN][1000 genomes]
rs11800773	0.96[ASN][1000 genomes]
rs11804906	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081543	0.96[ASN][1000 genomes]
rs12119683	0.92[EUR][1000 genomes]
rs12119831	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12744110	0.92[EUR][1000 genomes]
rs34631693	0.96[ASN][1000 genomes]
rs41285920	0.98[ASN][1000 genomes]
rs4468206	0.93[EUR][1000 genomes]
rs4550097	0.92[ASN][1000 genomes]
rs4565759	0.96[ASN][1000 genomes]
rs4573554	0.93[EUR][1000 genomes]
rs4927274	0.92[EUR][1000 genomes]
rs4927275	0.93[EUR][1000 genomes]
rs4927276	0.93[EUR][1000 genomes]
rs56686347	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588578	0.96[ASN][1000 genomes]
rs6588581	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660000	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670350	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684599	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695436	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6699283	0.92[ASN][1000 genomes]
rs72904468	0.80[EUR][1000 genomes]
rs74072586	0.96[ASN][1000 genomes]
rs74072587	0.96[ASN][1000 genomes]
rs7538008	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538057	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6588591	YIPF1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56397200-56403400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:56398000-56403400	Weak transcription	Ovary	ovary
3	chr1:56398400-56404000	Weak transcription	Fetal Lung	lung
4	chr1:56398600-56403600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56402000-56416800	Weak transcription	Aorta	Aorta

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