Variant report

Variant	rs4550097
Chromosome Location	chr1:56406811-56406812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11206684	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11206686	0.92[ASN][1000 genomes]
rs11576242	0.87[EUR][1000 genomes]
rs11578335	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11580270	0.96[AFR][1000 genomes]
rs11583130	0.92[ASN][1000 genomes]
rs11583537	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11584090	0.96[AFR][1000 genomes]
rs11587793	0.96[AFR][1000 genomes]
rs11590983	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11800773	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11804906	0.92[ASN][1000 genomes]
rs12081543	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12119831	0.88[ASN][1000 genomes]
rs12565147	0.96[AFR][1000 genomes]
rs12566044	0.90[AFR][1000 genomes]
rs34631693	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41285920	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4342888	0.96[AFR][1000 genomes]
rs4348768	0.96[AFR][1000 genomes]
rs4517389	0.96[AFR][1000 genomes]
rs4520452	0.96[AFR][1000 genomes]
rs4526652	0.96[AFR][1000 genomes]
rs4529753	0.96[AFR][1000 genomes]
rs4565759	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4586015	0.96[AFR][1000 genomes]
rs4586016	0.96[AFR][1000 genomes]
rs56663249	0.83[EUR][1000 genomes]
rs56686347	0.92[ASN][1000 genomes]
rs61064012	0.83[EUR][1000 genomes]
rs61456650	0.95[AFR][1000 genomes]
rs6588578	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6588581	0.92[ASN][1000 genomes]
rs6588591	0.92[ASN][1000 genomes]
rs6660000	0.92[ASN][1000 genomes]
rs6670350	0.92[ASN][1000 genomes]
rs6684599	0.92[ASN][1000 genomes]
rs6695436	0.88[ASN][1000 genomes]
rs6699262	0.96[AFR][1000 genomes]
rs6699283	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699468	0.93[AFR][1000 genomes]
rs6699573	0.96[AFR][1000 genomes]
rs6699599	0.96[AFR][1000 genomes]
rs74072586	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74072587	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533392	0.95[AFR][1000 genomes]
rs7538008	0.92[ASN][1000 genomes]
rs7538057	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7552503	0.96[AFR][1000 genomes]
rs7552520	0.96[AFR][1000 genomes]
rs9787007	0.95[AFR][1000 genomes]
rs9787274	0.95[AFR][1000 genomes]
rs9787275	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3326463	chr1:56404789-56407792	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56402000-56416800	Weak transcription	Aorta	Aorta
2	chr1:56404600-56408600	Weak transcription	Fetal Lung	lung
3	chr1:56404600-56416200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56404800-56409000	Weak transcription	Colon Smooth Muscle	Colon

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