Variant report

Variant	rs11576242
Chromosome Location	chr1:56380229-56380230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11206684	0.96[EUR][1000 genomes]
rs11578335	1.00[EUR][1000 genomes]
rs11578498	0.80[EUR][1000 genomes]
rs11579038	0.80[EUR][1000 genomes]
rs11581648	0.84[EUR][1000 genomes]
rs11583537	1.00[EUR][1000 genomes]
rs11586123	0.80[EUR][1000 genomes]
rs11587235	0.80[EUR][1000 genomes]
rs11589166	0.84[EUR][1000 genomes]
rs11590983	1.00[EUR][1000 genomes]
rs11800773	1.00[EUR][1000 genomes]
rs12081543	1.00[EUR][1000 genomes]
rs12119683	0.97[ASN][1000 genomes]
rs12744110	0.94[ASN][1000 genomes]
rs17112873	0.80[EUR][1000 genomes]
rs17112980	0.80[EUR][1000 genomes]
rs17113009	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17113019	0.82[EUR][1000 genomes]
rs34631693	1.00[EUR][1000 genomes]
rs41285920	1.00[EUR][1000 genomes]
rs4367817	0.92[MEX][hapmap]
rs4450055	0.80[EUR][1000 genomes]
rs4468206	0.97[ASN][1000 genomes]
rs4550097	0.87[EUR][1000 genomes]
rs4559554	0.97[ASN][1000 genomes]
rs4565759	1.00[EUR][1000 genomes]
rs4573554	0.97[ASN][1000 genomes]
rs4595404	0.82[EUR][1000 genomes]
rs4927274	0.97[ASN][1000 genomes]
rs4927275	0.94[ASN][1000 genomes]
rs4927276	0.94[ASN][1000 genomes]
rs56663249	0.96[EUR][1000 genomes]
rs57046577	0.84[EUR][1000 genomes]
rs57145918	0.80[EUR][1000 genomes]
rs58221753	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59699301	0.84[EUR][1000 genomes]
rs61064012	0.96[EUR][1000 genomes]
rs61497682	0.87[EUR][1000 genomes]
rs6588578	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6678002	0.86[EUR][1000 genomes]
rs6699283	0.87[EUR][1000 genomes]
rs74072586	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74072587	1.00[EUR][1000 genomes]
rs7538057	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56365200-56382200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56378000-56383200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:56379600-56381200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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