Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10888945	0.82[EUR][1000 genomes]
rs11206685	0.81[EUR][1000 genomes]
rs11206686	0.99[EUR][1000 genomes]
rs11206687	0.80[EUR][1000 genomes]
rs11576242	0.97[ASN][1000 genomes]
rs11583130	0.98[EUR][1000 genomes]
rs11804906	0.99[EUR][1000 genomes]
rs12062107	0.82[EUR][1000 genomes]
rs12119683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119831	0.99[EUR][1000 genomes]
rs12744110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4468206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559554	1.00[ASN][1000 genomes]
rs4573554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927275	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4927276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4927277	0.88[AFR][1000 genomes]
rs56686347	0.96[EUR][1000 genomes]
rs6588581	0.99[EUR][1000 genomes]
rs6588591	0.92[EUR][1000 genomes]
rs6660000	0.98[EUR][1000 genomes]
rs6670350	0.99[EUR][1000 genomes]
rs6684599	0.99[EUR][1000 genomes]
rs6695436	0.99[EUR][1000 genomes]
rs72904468	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7538008	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56386800-56396600	Weak transcription	Esophagus	oesophagus
2	chr1:56393400-56398000	Enhancers	Adipose Nuclei	Adipose
3	chr1:56393600-56396600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:56393800-56398200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:56394400-56397000	Weak transcription	Right Ventricle	heart
6	chr1:56394800-56396600	Weak transcription	Fetal Lung	lung
7	chr1:56394800-56396800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:56395000-56396600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:56395000-56396600	Weak transcription	Fetal Stomach	stomach
10	chr1:56395200-56398000	Enhancers	Ovary	ovary
11	chr1:56395200-56398400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:56395400-56397200	Enhancers	Right Atrium	heart
13	chr1:56395400-56399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:56395800-56396600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:56395800-56396600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:56395800-56396800	Weak transcription	Placenta	Placenta
17	chr1:56395800-56397800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr1:56396200-56397200	Enhancers	Stomach Smooth Muscle	stomach
19	chr1:56396200-56398600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:56396400-56397600	Enhancers	Brain Germinal Matrix	brain

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