Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10888943	0.92[AMR][1000 genomes]
rs10888946	0.84[EUR][1000 genomes]
rs11206687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206688	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12081053	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12119683	0.81[EUR][1000 genomes]
rs12744110	0.81[EUR][1000 genomes]
rs4471303	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4926699	0.81[AMR][1000 genomes]
rs4926700	0.85[AMR][1000 genomes]
rs4926701	0.92[AMR][1000 genomes]
rs4926703	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4927274	0.81[EUR][1000 genomes]
rs4927277	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6656718	0.82[EUR][1000 genomes]
rs6665427	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6666177	0.93[AMR][1000 genomes]
rs6666586	0.93[AMR][1000 genomes]
rs6666606	0.88[AMR][1000 genomes]
rs6681658	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6684261	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56382600-56393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56382800-56392800	Weak transcription	Fetal Lung	lung
3	chr1:56383000-56393400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:56386800-56392800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56386800-56395400	Weak transcription	Placenta	Placenta
6	chr1:56386800-56396600	Weak transcription	Esophagus	oesophagus
7	chr1:56387800-56393000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56387800-56393400	Weak transcription	Adipose Nuclei	Adipose
9	chr1:56392400-56393200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:56392600-56393000	Enhancers	Aorta	Aorta

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