Variant report

Variant	rs4926701
Chromosome Location	chr1:56344719-56344720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10888943	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888946	0.88[EUR][1000 genomes]
rs11206685	0.92[AMR][1000 genomes]
rs11206687	0.92[AMR][1000 genomes]
rs11206688	0.86[AMR][1000 genomes]
rs17113017	0.95[ASN][1000 genomes]
rs17113021	0.94[ASN][1000 genomes]
rs4471303	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4926699	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4926700	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4926703	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4927277	0.84[AMR][1000 genomes]
rs6665427	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6666177	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6666586	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6666606	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6681658	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6684261	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56342200-56345200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56342600-56344800	Enhancers	Fetal Intestine Small	intestine
3	chr1:56343600-56344800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:56343800-56350400	Weak transcription	NHDF-Ad	bronchial
5	chr1:56344200-56345200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56344200-56348400	Weak transcription	Fetal Lung	lung
7	chr1:56344400-56344800	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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