Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10888943	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10888944	0.91[AMR][1000 genomes]
rs10888945	0.81[EUR][1000 genomes]
rs10888946	0.86[EUR][1000 genomes]
rs11206685	0.81[AMR][1000 genomes]
rs11206687	0.81[AMR][1000 genomes]
rs12062107	0.81[EUR][1000 genomes]
rs17113017	0.88[ASN][1000 genomes]
rs17113021	0.87[ASN][1000 genomes]
rs4471303	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4926700	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926701	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4926703	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4927277	0.81[AMR][1000 genomes]
rs6665427	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6666177	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6666586	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6666606	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6681658	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6684261	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56326000-56342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56335200-56342000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:56336600-56342000	Weak transcription	Osteobl	bone
4	chr1:56339200-56342000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:56339200-56342000	Weak transcription	NHDF-Ad	bronchial
6	chr1:56339400-56342000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:56340800-56342000	Weak transcription	Right Atrium	heart
8	chr1:56340800-56342200	Enhancers	Psoas Muscle	Psoas
9	chr1:56341600-56344200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:56341800-56342400	Enhancers	Adipose Nuclei	Adipose
11	chr1:56341800-56342600	Enhancers	Ovary	ovary
12	chr1:56341800-56342800	Enhancers	Aorta	Aorta

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