Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10888943	0.92[AMR][1000 genomes]
rs10888946	0.84[EUR][1000 genomes]
rs11206685	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206688	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206689	0.82[CEU][hapmap]
rs12081053	0.83[CEU][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12119683	0.80[EUR][1000 genomes]
rs12744110	0.80[EUR][1000 genomes]
rs4468206	0.81[EUR][1000 genomes]
rs4471303	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4573554	0.81[EUR][1000 genomes]
rs4926699	0.81[AMR][1000 genomes]
rs4926700	0.85[AMR][1000 genomes]
rs4926701	0.92[AMR][1000 genomes]
rs4926703	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4927274	0.80[EUR][1000 genomes]
rs4927275	0.81[EUR][1000 genomes]
rs4927276	0.81[EUR][1000 genomes]
rs4927277	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6656718	0.83[EUR][1000 genomes]
rs6665427	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6666177	0.93[AMR][1000 genomes]
rs6666586	0.93[AMR][1000 genomes]
rs6666606	0.88[AMR][1000 genomes]
rs6681658	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6684261	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3374566	chr1:56400589-56402612	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
3	esv2614647	chr1:56400766-56402350	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
4	esv3322038	chr1:56401064-56402112	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	esv9548	chr1:56401073-56401868	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv2378584	chr1:56401099-56401797	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11206687	YIPF1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56397200-56403400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:56398000-56403400	Weak transcription	Ovary	ovary
3	chr1:56398400-56404000	Weak transcription	Fetal Lung	lung
4	chr1:56398600-56403600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56401000-56401200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:56401000-56401800	Weak transcription	Aorta	Aorta

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