Variant report

Variant	rs4468206
Chromosome Location	chr1:56397362-56397363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56385562..56386307-chr1:56396787..56397745,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10888945	0.82[EUR][1000 genomes]
rs11206686	0.98[EUR][1000 genomes]
rs11206687	0.81[EUR][1000 genomes]
rs11206689	0.82[CEU][hapmap]
rs11576242	0.97[ASN][1000 genomes]
rs11583130	0.99[EUR][1000 genomes]
rs11804906	0.98[EUR][1000 genomes]
rs12062107	0.81[EUR][1000 genomes]
rs12119683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119831	0.98[EUR][1000 genomes]
rs12744110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4559554	1.00[ASN][1000 genomes]
rs4573554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927275	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4927276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4927277	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs56686347	0.96[EUR][1000 genomes]
rs6588581	0.98[EUR][1000 genomes]
rs6588591	0.93[EUR][1000 genomes]
rs6660000	0.99[EUR][1000 genomes]
rs6670350	0.98[EUR][1000 genomes]
rs6684599	0.98[EUR][1000 genomes]
rs6695436	0.98[EUR][1000 genomes]
rs72904468	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7538008	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4468206	YIPF1	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56393400-56398000	Enhancers	Adipose Nuclei	Adipose
2	chr1:56393800-56398200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:56395200-56398000	Enhancers	Ovary	ovary
4	chr1:56395200-56398400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56395400-56399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:56395800-56397800	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr1:56396200-56398600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56396400-56397600	Enhancers	Brain Germinal Matrix	brain
9	chr1:56396600-56397400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:56396600-56397600	Enhancers	Fetal Stomach	stomach
11	chr1:56396600-56398000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:56396600-56398200	Enhancers	Colon Smooth Muscle	Colon
13	chr1:56396600-56398200	Enhancers	Fetal Heart	heart
14	chr1:56396600-56398400	Enhancers	Fetal Lung	lung
15	chr1:56396800-56397400	Enhancers	Placenta	Placenta
16	chr1:56396800-56397800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:56396800-56397800	Enhancers	Rectal Smooth Muscle	rectum
18	chr1:56396800-56398000	Enhancers	Osteobl	bone
19	chr1:56396800-56399000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr1:56397000-56397600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:56397000-56398000	Enhancers	HMEC	breast
22	chr1:56397000-56398000	Enhancers	HSMMtube	muscle
23	chr1:56397000-56398200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:56397200-56397600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:56397200-56397600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:56397200-56398000	Enhancers	NHEK	skin
27	chr1:56397200-56403400	Weak transcription	Fetal Muscle Trunk	muscle

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