Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10888945	0.82[EUR][1000 genomes]
rs11206686	0.98[EUR][1000 genomes]
rs11206687	0.81[EUR][1000 genomes]
rs11206689	0.82[CEU][hapmap]
rs11576242	0.97[ASN][1000 genomes]
rs11583130	0.99[EUR][1000 genomes]
rs11804906	0.98[EUR][1000 genomes]
rs12062107	0.81[EUR][1000 genomes]
rs12119683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119831	0.98[EUR][1000 genomes]
rs12744110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4468206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559554	1.00[ASN][1000 genomes]
rs4927274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927275	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4927276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4927277	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs56686347	0.96[EUR][1000 genomes]
rs6588581	0.98[EUR][1000 genomes]
rs6588591	0.93[EUR][1000 genomes]
rs6660000	0.99[EUR][1000 genomes]
rs6670350	0.98[EUR][1000 genomes]
rs6684599	0.98[EUR][1000 genomes]
rs6695436	0.98[EUR][1000 genomes]
rs72904468	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7538008	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4573554	YIPF1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56393800-56398200	Enhancers	Fetal Muscle Leg	muscle
2	chr1:56395200-56398400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:56395400-56399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:56396200-56398600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56396600-56398200	Enhancers	Colon Smooth Muscle	Colon
6	chr1:56396600-56398200	Enhancers	Fetal Heart	heart
7	chr1:56396600-56398400	Enhancers	Fetal Lung	lung
8	chr1:56396800-56399000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr1:56397000-56398200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:56397200-56403400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:56397600-56398600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr1:56398000-56403400	Weak transcription	Ovary	ovary

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